Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PTO1508Hypothetical protein. (252 aa)    
Predicted Functional Partners:
PTO1119
Carbon monoxide dehydrogenase, medium chain.
 
 
 0.927
PTO1121
Carbon monoxide dehydrogenase beta subunit.
 
 
 0.808
PTO1120
Carbon monoxide dehydrogenase alpha subunit.
 
  
 0.714
PTO1477
Molybdopterin-guanine dinucleotide biosynthesis protein A.
 
  
 0.714
PTO1085
Adenine deaminase.
 
  
 0.643
PTO1507
Hypothetical membrane associated protein.
       0.549
PTO1506
Conserved hypothetical protein.
       0.487
PTO1527
Cysteine desulfurase.
 
   
 0.482
PTO1504
3-hydroxybutyryl-CoA dehydrogenase.
       0.478
PTO1505
acetyl-CoA acetyltransferase.
       0.478
Your Current Organism:
Picrophilus torridus
NCBI taxonomy Id: 263820
Other names: P. torridus DSM 9790, Picrophilus torridus DSM 9790, Picrophilus torridus DSM9790, Picrophilus torridus str. DSM 9790, Picrophilus torridus strain DSM 9790
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