Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SJZ40575.1 | SJZ44098.1 | SAMN02745116_00203 | SAMN02745116_00311 | Uncharacterized protein, UPF0297 family; Belongs to the UPF0297 family. | Hypothetical protein. | 0.638 |
SJZ40575.1 | SJZ97232.1 | SAMN02745116_00203 | SAMN02745116_02019 | Uncharacterized protein, UPF0297 family; Belongs to the UPF0297 family. | Hypothetical protein; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein. | 0.647 |
SJZ40575.1 | SKA02457.1 | SAMN02745116_00203 | SAMN02745116_02181 | Uncharacterized protein, UPF0297 family; Belongs to the UPF0297 family. | Hypothetical protein. | 0.607 |
SJZ44098.1 | SJZ40575.1 | SAMN02745116_00311 | SAMN02745116_00203 | Hypothetical protein. | Uncharacterized protein, UPF0297 family; Belongs to the UPF0297 family. | 0.638 |
SJZ44098.1 | SJZ44117.1 | SAMN02745116_00311 | SAMN02745116_00312 | Hypothetical protein. | Ribosomal protein L7Ae. | 0.990 |
SJZ44098.1 | SJZ97232.1 | SAMN02745116_00311 | SAMN02745116_02019 | Hypothetical protein. | Hypothetical protein; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein. | 0.595 |
SJZ44098.1 | SKA02457.1 | SAMN02745116_00311 | SAMN02745116_02181 | Hypothetical protein. | Hypothetical protein. | 0.632 |
SJZ44098.1 | infB | SAMN02745116_00311 | SAMN02745116_00313 | Hypothetical protein. | Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. | 0.962 |
SJZ44098.1 | nusA | SAMN02745116_00311 | SAMN02745116_00310 | Hypothetical protein. | NusA antitermination factor; Participates in both transcription termination and antitermination. | 0.977 |
SJZ44098.1 | rbfA | SAMN02745116_00311 | SAMN02745116_00314 | Hypothetical protein. | Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA. | 0.732 |
SJZ44098.1 | rimP | SAMN02745116_00311 | SAMN02745116_00309 | Hypothetical protein. | Ribosome maturation factor RimP; Required for maturation of 30S ribosomal subunits. Belongs to the RimP family. | 0.949 |
SJZ44098.1 | rplW | SAMN02745116_00311 | SAMN02745116_01839 | Hypothetical protein. | Large subunit ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. | 0.562 |
SJZ44098.1 | rpsL | SAMN02745116_00311 | SAMN02745116_01852 | Hypothetical protein. | SSU ribosomal protein S12P; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 0.559 |
SJZ44117.1 | SJZ44098.1 | SAMN02745116_00312 | SAMN02745116_00311 | Ribosomal protein L7Ae. | Hypothetical protein. | 0.990 |
SJZ44117.1 | SJZ97232.1 | SAMN02745116_00312 | SAMN02745116_02019 | Ribosomal protein L7Ae. | Hypothetical protein; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein. | 0.420 |
SJZ44117.1 | infB | SAMN02745116_00312 | SAMN02745116_00313 | Ribosomal protein L7Ae. | Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. | 0.998 |
SJZ44117.1 | nusA | SAMN02745116_00312 | SAMN02745116_00310 | Ribosomal protein L7Ae. | NusA antitermination factor; Participates in both transcription termination and antitermination. | 0.980 |
SJZ44117.1 | rbfA | SAMN02745116_00312 | SAMN02745116_00314 | Ribosomal protein L7Ae. | Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA. | 0.658 |
SJZ44117.1 | rimP | SAMN02745116_00312 | SAMN02745116_00309 | Ribosomal protein L7Ae. | Ribosome maturation factor RimP; Required for maturation of 30S ribosomal subunits. Belongs to the RimP family. | 0.941 |
SJZ44117.1 | rplW | SAMN02745116_00312 | SAMN02745116_01839 | Ribosomal protein L7Ae. | Large subunit ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. | 0.999 |
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