Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| SJZ36949.1 | recU | SAMN02745116_00066 | SAMN02745116_00561 | single-stranded-DNA-specific exonuclease. | Recombination protein U; Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation; Belongs to the RecU family. | 0.572 |
| SJZ50117.1 | SJZ50150.1 | SAMN02745116_00560 | SAMN02745116_00562 | Penicillin-binding protein 1A. | Site-specific recombinase XerD; Belongs to the 'phage' integrase family. | 0.513 |
| SJZ50117.1 | SJZ60294.1 | SAMN02745116_00560 | SAMN02745116_00888 | Penicillin-binding protein 1A. | Membrane protein involved in the export of O-antigen and teichoic acid. | 0.404 |
| SJZ50117.1 | SJZ85622.1 | SAMN02745116_00560 | SAMN02745116_01616 | Penicillin-binding protein 1A. | Uncharacterized protein. | 0.433 |
| SJZ50117.1 | SKA11328.1 | SAMN02745116_00560 | SAMN02745116_02446 | Penicillin-binding protein 1A. | DivIVA domain-containing protein; Divisome component that associates with the complex late in its assembly, after the Z-ring is formed, and is dependent on DivIC and PBP2B for its recruitment to the divisome. Together with EzrA, is a key component of the system that regulates PBP1 localization during cell cycle progression. Its main role could be the removal of PBP1 from the cell pole after pole maturation is completed. Also contributes to the recruitment of PBP1 to the division complex. Not essential for septum formation. | 0.863 |
| SJZ50117.1 | SKA11359.1 | SAMN02745116_00560 | SAMN02745116_02448 | Penicillin-binding protein 1A. | Uncharacterized SPBc2 prophage-derived protein YoqJ; Belongs to the UPF0398 family. | 0.530 |
| SJZ50117.1 | recU | SAMN02745116_00560 | SAMN02745116_00561 | Penicillin-binding protein 1A. | Recombination protein U; Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation; Belongs to the RecU family. | 0.905 |
| SJZ50150.1 | SJZ50117.1 | SAMN02745116_00562 | SAMN02745116_00560 | Site-specific recombinase XerD; Belongs to the 'phage' integrase family. | Penicillin-binding protein 1A. | 0.513 |
| SJZ50150.1 | recU | SAMN02745116_00562 | SAMN02745116_00561 | Site-specific recombinase XerD; Belongs to the 'phage' integrase family. | Recombination protein U; Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation; Belongs to the RecU family. | 0.555 |
| SJZ53521.1 | SJZ81483.1 | SAMN02745116_00667 | SAMN02745116_01511 | Uncharacterized protein YjbK. | Hypothetical protein. | 0.618 |
| SJZ53521.1 | SJZ85622.1 | SAMN02745116_00667 | SAMN02745116_01616 | Uncharacterized protein YjbK. | Uncharacterized protein. | 0.447 |
| SJZ53521.1 | SJZ87618.1 | SAMN02745116_00667 | SAMN02745116_01687 | Uncharacterized protein YjbK. | Regulatory protein spx; Belongs to the ArsC family. | 0.429 |
| SJZ53521.1 | recU | SAMN02745116_00667 | SAMN02745116_00561 | Uncharacterized protein YjbK. | Recombination protein U; Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation; Belongs to the RecU family. | 0.631 |
| SJZ60294.1 | SJZ50117.1 | SAMN02745116_00888 | SAMN02745116_00560 | Membrane protein involved in the export of O-antigen and teichoic acid. | Penicillin-binding protein 1A. | 0.404 |
| SJZ60294.1 | SJZ85622.1 | SAMN02745116_00888 | SAMN02745116_01616 | Membrane protein involved in the export of O-antigen and teichoic acid. | Uncharacterized protein. | 0.651 |
| SJZ60294.1 | recU | SAMN02745116_00888 | SAMN02745116_00561 | Membrane protein involved in the export of O-antigen and teichoic acid. | Recombination protein U; Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation; Belongs to the RecU family. | 0.540 |
| SJZ81483.1 | SJZ53521.1 | SAMN02745116_01511 | SAMN02745116_00667 | Hypothetical protein. | Uncharacterized protein YjbK. | 0.618 |
| SJZ81483.1 | SJZ85622.1 | SAMN02745116_01511 | SAMN02745116_01616 | Hypothetical protein. | Uncharacterized protein. | 0.648 |
| SJZ81483.1 | SJZ87618.1 | SAMN02745116_01511 | SAMN02745116_01687 | Hypothetical protein. | Regulatory protein spx; Belongs to the ArsC family. | 0.581 |
| SJZ81483.1 | SKA11328.1 | SAMN02745116_01511 | SAMN02745116_02446 | Hypothetical protein. | DivIVA domain-containing protein; Divisome component that associates with the complex late in its assembly, after the Z-ring is formed, and is dependent on DivIC and PBP2B for its recruitment to the divisome. Together with EzrA, is a key component of the system that regulates PBP1 localization during cell cycle progression. Its main role could be the removal of PBP1 from the cell pole after pole maturation is completed. Also contributes to the recruitment of PBP1 to the division complex. Not essential for septum formation. | 0.667 |
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