Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SJZ54906.1 | SJZ59651.1 | SAMN02745116_00691 | SAMN02745116_00859 | ThiF family protein. | Cysteine desulfurase. | 0.782 |
SJZ54906.1 | SJZ94736.1 | SAMN02745116_00691 | SAMN02745116_01926 | ThiF family protein. | Rhodanese-related sulfurtransferase. | 0.604 |
SJZ54906.1 | SKA08334.1 | SAMN02745116_00691 | SAMN02745116_02355 | ThiF family protein. | Cysteine desulfurase. | 0.782 |
SJZ54906.1 | thiI | SAMN02745116_00691 | SAMN02745116_00860 | ThiF family protein. | Thiamine biosynthesis protein ThiI; Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS. | 0.574 |
SJZ59651.1 | SJZ54906.1 | SAMN02745116_00859 | SAMN02745116_00691 | Cysteine desulfurase. | ThiF family protein. | 0.782 |
SJZ59651.1 | SJZ94736.1 | SAMN02745116_00859 | SAMN02745116_01926 | Cysteine desulfurase. | Rhodanese-related sulfurtransferase. | 0.728 |
SJZ59651.1 | SKA08334.1 | SAMN02745116_00859 | SAMN02745116_02355 | Cysteine desulfurase. | Cysteine desulfurase. | 0.888 |
SJZ59651.1 | mnmA | SAMN02745116_00859 | SAMN02745116_01257 | Cysteine desulfurase. | tRNA-specific 2-thiouridylase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34. | 0.460 |
SJZ59651.1 | thiI | SAMN02745116_00859 | SAMN02745116_00860 | Cysteine desulfurase. | Thiamine biosynthesis protein ThiI; Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS. | 0.989 |
SJZ94736.1 | SJZ54906.1 | SAMN02745116_01926 | SAMN02745116_00691 | Rhodanese-related sulfurtransferase. | ThiF family protein. | 0.604 |
SJZ94736.1 | SJZ59651.1 | SAMN02745116_01926 | SAMN02745116_00859 | Rhodanese-related sulfurtransferase. | Cysteine desulfurase. | 0.728 |
SJZ94736.1 | SKA08334.1 | SAMN02745116_01926 | SAMN02745116_02355 | Rhodanese-related sulfurtransferase. | Cysteine desulfurase. | 0.714 |
SJZ94736.1 | thiI | SAMN02745116_01926 | SAMN02745116_00860 | Rhodanese-related sulfurtransferase. | Thiamine biosynthesis protein ThiI; Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS. | 0.538 |
SJZ96150.1 | SKA05893.1 | SAMN02745116_01974 | SAMN02745116_02275 | 16S rRNA (cytosine967-C5)-methyltransferase; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | NOL1/NOP2/sun family putative RNA methylase. | 0.468 |
SJZ96150.1 | cinA | SAMN02745116_01974 | SAMN02745116_00519 | 16S rRNA (cytosine967-C5)-methyltransferase; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | Nicotinamide-nucleotide amidase; Belongs to the CinA family. | 0.631 |
SJZ96150.1 | mnmA | SAMN02745116_01974 | SAMN02745116_01257 | 16S rRNA (cytosine967-C5)-methyltransferase; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | tRNA-specific 2-thiouridylase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34. | 0.533 |
SJZ96150.1 | rny | SAMN02745116_01974 | SAMN02745116_01708 | 16S rRNA (cytosine967-C5)-methyltransferase; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | Ribonucrease Y; Endoribonuclease that initiates mRNA decay. | 0.526 |
SJZ96150.1 | thiI | SAMN02745116_01974 | SAMN02745116_00860 | 16S rRNA (cytosine967-C5)-methyltransferase; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | Thiamine biosynthesis protein ThiI; Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS. | 0.955 |
SKA05893.1 | SJZ96150.1 | SAMN02745116_02275 | SAMN02745116_01974 | NOL1/NOP2/sun family putative RNA methylase. | 16S rRNA (cytosine967-C5)-methyltransferase; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | 0.468 |
SKA05893.1 | cinA | SAMN02745116_02275 | SAMN02745116_00519 | NOL1/NOP2/sun family putative RNA methylase. | Nicotinamide-nucleotide amidase; Belongs to the CinA family. | 0.449 |
page 1 of 3