STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SJZ74029.1DNA-binding transcriptional regulator, XRE-family HTH domain. (117 aa)    
Predicted Functional Partners:
cinA
Nicotinamide-nucleotide amidase; Belongs to the CinA family.
    
 0.773
SJZ79635.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
  
 
 0.619
SJZ68670.1
Two component transcriptional regulator, LuxR family.
   
 0.474
SJZ71814.1
Two-component system, NarL family, response regulator LiaR.
   
 0.474
cmk
Cytidylate kinase.
    
  0.427
Your Current Organism:
Pilibacter termitis
NCBI taxonomy Id: 263852
Other names: CCUG 49613, P. termitis, Pilibacter termitis Higashiguchi et al. 2006, gut bacterium 1 of Coptotermes formosanus, strain TI-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.