STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SJZ95826.1Peptidoglycan/xylan/chitin deacetylase, PgdA/CDA1 family. (478 aa)    
Predicted Functional Partners:
SJZ71538.1
Hyaluronan synthase.
 
 0.978
SJZ90344.1
Poly-beta-1,6 N-acetyl-D-glucosamine synthase.
 
 
 0.974
SJZ51187.1
Chitinase.
    
 0.865
SJZ96178.1
Serine/threonine protein kinase.
 
 
 0.653
SJZ94538.1
Protein kinase domain-containing protein.
  
  
 0.581
SKA09640.1
Xylan 1,4-beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.
    
 0.508
SJZ96161.1
Protein phosphatase.
  
    0.468
pyrC
Dihydroorotase; Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate; Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily.
    
  0.465
gyrA
DNA gyrase subunit A; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.
  
    0.460
SJZ86117.1
Intein N-terminal splicing region.
  
 
 0.455
Your Current Organism:
Pilibacter termitis
NCBI taxonomy Id: 263852
Other names: CCUG 49613, P. termitis, Pilibacter termitis Higashiguchi et al. 2006, gut bacterium 1 of Coptotermes formosanus, strain TI-1
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