STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKA13250.1Signal transduction histidine kinase. (490 aa)    
Predicted Functional Partners:
SKA13234.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
 0.985
SJZ43633.1
Two-component system, OmpR family, response regulator VicR.
 0.966
SKA12867.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
 0.920
SJZ85594.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
 0.905
SJZ62498.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
 0.899
SJZ63125.1
Two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP.
 0.899
SJZ62440.1
Two-component system, OmpR family, KDP operon response regulator KdpE.
 0.833
nfo
Endonuclease IV; Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin.
       0.774
SJZ36628.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
 0.770
SJZ74291.1
Two-component system, OmpR family, response regulator CiaR.
 0.749
Your Current Organism:
Pilibacter termitis
NCBI taxonomy Id: 263852
Other names: CCUG 49613, P. termitis, Pilibacter termitis Higashiguchi et al. 2006, gut bacterium 1 of Coptotermes formosanus, strain TI-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.