STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKA14189.1Heptaprenyl diphosphate synthase; Belongs to the FPP/GGPP synthase family. (325 aa)    
Predicted Functional Partners:
SKA14200.1
1,4-dihydroxy-2-naphthoate octaprenyltransferase.
 
  
 0.939
SJZ76563.1
Heptaprenyl diphosphate synthase.
 
 
 0.933
SJZ75093.1
Undecaprenyl diphosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
 
 
 0.871
SJZ66991.1
1,4-dihydroxy-2-naphthoate octaprenyltransferase.
 
  
 0.869
SKA00413.1
1,4-dihydroxy-2-naphthoate octaprenyltransferase.
 
  
 0.869
SJZ81902.1
Geranylgeranyl diphosphate synthase, type II; Belongs to the FPP/GGPP synthase family.
  
  
 
0.828
SJZ72687.1
NADH dehydrogenase.
 
  
 0.811
SJZ76554.1
Hypothetical protein.
 
 
  0.764
fni
Isopentenyl-diphosphate delta-isomerase; Involved in the biosynthesis of isoprenoids. Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP).
  
 
 0.750
SKA02330.1
ATP-binding cassette, subfamily C, CydC.
  
     0.734
Your Current Organism:
Pilibacter termitis
NCBI taxonomy Id: 263852
Other names: CCUG 49613, P. termitis, Pilibacter termitis Higashiguchi et al. 2006, gut bacterium 1 of Coptotermes formosanus, strain TI-1
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