STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AAZ59787.1Aminotransferase. (403 aa)    
Predicted Functional Partners:
AAZ62486.1
Glutamate synthase (NADH) large subunit.
  
  
 0.586
AAZ62574.1
NAD(P)H dehydrogenase (quinone).
  
    0.552
AAZ61936.1
Prephenate dehydratase.
 
  
 0.540
AAZ62779.1
D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region:D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding protein.
 
 
 0.471
truB
tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.
 
   0.445
AAZ61077.1
Helix-turn-helix, Fis-type.
  
     0.444
AAZ63965.1
D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region:D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding protein.
 
 
 0.432
AAZ64377.1
Shikimate dehydrogenase.
 
  
 0.422
AAZ60260.1
Farnesyl-diphosphate synthase; Belongs to the FPP/GGPP synthase family.
 
  
 0.415
guaA
GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.
 
  
 0.414
Your Current Organism:
Cupriavidus pinatubonensis
NCBI taxonomy Id: 264198
Other names: C. pinatubonensis JMP134, Cupriavidus necator JMP134, Cupriavidus pinatubonensis JMP134, Ralstonia eutropha JMP134, Ralstonia eutropha str. JMP134, Ralstonia eutropha strain JMP134, Ralstonia sp. JMP134, Wautersia eutropha JMP134
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