STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
stu0078D-alanyl-D-alanine carboxypeptidase, truncated; Truncated. (273 aa)    
Predicted Functional Partners:
dacA1
D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein; Belongs to the peptidase S11 family.
 
  
 
0.931
pbp2B
Penicillin-binding protein 2B.
  
 
 0.925
pbp2X
Penicillin binding protein 2X.
  
 
 0.921
pbp1A
Penicillin-binding protein 1A.
  
 
 0.912
pbp2A
Penicillin-binding protein 2A.
  
 
 0.910
pbp1B
Penicillin-binding protein 1B.
  
 
 0.908
dacB
D-alanyl-D-alanine-carboxypeptidase.
    
 0.905
stu1059
D-alanyl-D-alanine-carboxypeptidase, penicillin-binding protein, truncated; Truncated.
 
     0.711
stu0079
D-alanyl-D-alanine carboxypeptidase, truncated; Truncated.
       0.592
Your Current Organism:
Streptococcus thermophilus
NCBI taxonomy Id: 264199
Other names: S. thermophilus LMG 18311, Streptococcus thermophilus LMG 18311, Streptococcus thermophilus str. LMG 18311, Streptococcus thermophilus strain LMG 18311
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