Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
labTBacteriocin exporter, putative. (291 aa)    
Predicted Functional Partners:
labC
Lantibiotic biosynthesis protein.
       0.709
labB
Lantibiotic biosynthesis protein.
  
    0.594
stu0182
Positive transcriptional regulator MutR family.
 
   
 0.488
stu1947
Positive transcriptional regulator MutR family.
 
   
 0.485
stu1950
Positive transcriptional regulator MutR family, truncated; Truncated.
 
   
 0.459
stu0927
ABC transporter membrane-spanning protein, truncated; Truncated.
 
     0.442
stu1496
MutT/nudix family protein.
 
    0.430
stu0917
Positive transcriptional regulator MutR family.
 
   
 0.426
stu1572
Positive transcriptional regulator MutR family.
 
   
 0.426
Your Current Organism:
Streptococcus thermophilus
NCBI taxonomy Id: 264199
Other names: S. thermophilus LMG 18311, Streptococcus thermophilus LMG 18311, Streptococcus thermophilus str. LMG 18311, Streptococcus thermophilus strain LMG 18311
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