Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| comEA | comEC | stu1562 | stu1561 | Late competence protein required for DNA binding and uptake. | Late competence protein required for DNA uptake. | 0.982 |
| comEA | comX | stu1562 | stu0130 | Late competence protein required for DNA binding and uptake. | Transcriptional regulator, competence factor,RNA polymerase sigma factor; Belongs to the sigma-70 factor family. | 0.662 |
| comEA | dprA | stu1562 | stu0896 | Late competence protein required for DNA binding and uptake. | DNA processing protein, Smf family. | 0.751 |
| comEA | endA | stu1562 | stu1165 | Late competence protein required for DNA binding and uptake. | Competence associated membrane nuclease. | 0.609 |
| comEA | ssbB | stu1562 | stu1753 | Late competence protein required for DNA binding and uptake. | Single strand binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism. | 0.614 |
| comEC | comEA | stu1561 | stu1562 | Late competence protein required for DNA uptake. | Late competence protein required for DNA binding and uptake. | 0.982 |
| comEC | comX | stu1561 | stu0130 | Late competence protein required for DNA uptake. | Transcriptional regulator, competence factor,RNA polymerase sigma factor; Belongs to the sigma-70 factor family. | 0.442 |
| comEC | dprA | stu1561 | stu0896 | Late competence protein required for DNA uptake. | DNA processing protein, Smf family. | 0.932 |
| comEC | endA | stu1561 | stu1165 | Late competence protein required for DNA uptake. | Competence associated membrane nuclease. | 0.693 |
| comEC | ssbB | stu1561 | stu1753 | Late competence protein required for DNA uptake. | Single strand binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism. | 0.586 |
| comX | comEA | stu0130 | stu1562 | Transcriptional regulator, competence factor,RNA polymerase sigma factor; Belongs to the sigma-70 factor family. | Late competence protein required for DNA binding and uptake. | 0.662 |
| comX | comEC | stu0130 | stu1561 | Transcriptional regulator, competence factor,RNA polymerase sigma factor; Belongs to the sigma-70 factor family. | Late competence protein required for DNA uptake. | 0.442 |
| comX | dprA | stu0130 | stu0896 | Transcriptional regulator, competence factor,RNA polymerase sigma factor; Belongs to the sigma-70 factor family. | DNA processing protein, Smf family. | 0.782 |
| comX | eep | stu0130 | stu0199 | Transcriptional regulator, competence factor,RNA polymerase sigma factor; Belongs to the sigma-70 factor family. | Conserved hypothetical, predicted membrane protein (TMS5). | 0.776 |
| comX | endA | stu0130 | stu1165 | Transcriptional regulator, competence factor,RNA polymerase sigma factor; Belongs to the sigma-70 factor family. | Competence associated membrane nuclease. | 0.489 |
| comX | mecA | stu0130 | stu0162 | Transcriptional regulator, competence factor,RNA polymerase sigma factor; Belongs to the sigma-70 factor family. | Negative regulator of genetic competence, putative; Enables the recognition and targeting of unfolded and aggregated proteins to the ClpC protease or to other proteins involved in proteolysis. | 0.489 |
| comX | plcR | stu0130 | stu0270 | Transcriptional regulator, competence factor,RNA polymerase sigma factor; Belongs to the sigma-70 factor family. | Transcriptional regulator. | 0.574 |
| comX | ssbB | stu0130 | stu1753 | Transcriptional regulator, competence factor,RNA polymerase sigma factor; Belongs to the sigma-70 factor family. | Single strand binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism. | 0.512 |
| comX | xer1 | stu0130 | stu1008 | Transcriptional regulator, competence factor,RNA polymerase sigma factor; Belongs to the sigma-70 factor family. | Integrase/recombinase, tyrosine family; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. Essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. | 0.489 |
| dprA | comEA | stu0896 | stu1562 | DNA processing protein, Smf family. | Late competence protein required for DNA binding and uptake. | 0.751 |
page 1 of 3