Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| cbiM | ecfA1 | stu0288 | stu2009 | Cobalamin biosynthesis protein, putative transporter. | ABC transporter ATP binding protein; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates (By similarity). Expression of the complex plus RibU in de-energized E.coli allows riboflavin uptake. | 0.701 |
| cbiM | ecfA2 | stu0288 | stu2008 | Cobalamin biosynthesis protein, putative transporter. | ABC transporter ATP binding protein; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates (By similarity). Expression of the complex plus RibU in de-energized E.coli allows riboflavin uptake. | 0.717 |
| cbiM | stu0289 | stu0288 | stu0289 | Cobalamin biosynthesis protein, putative transporter. | ABC transporter membrane-spanning protein. | 0.998 |
| cbiM | stu0290 | stu0288 | stu0290 | Cobalamin biosynthesis protein, putative transporter. | ABC transporter ATP-binding protein. | 0.995 |
| cbiM | stu0310 | stu0288 | stu0310 | Cobalamin biosynthesis protein, putative transporter. | ABC transporter membrane-spanning protein, truncated; Truncated. | 0.800 |
| cbiM | ureD | stu0288 | stu0287 | Cobalamin biosynthesis protein, putative transporter. | Urease accessory protein; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter. | 0.823 |
| cbiM | ureE | stu0288 | stu0284 | Cobalamin biosynthesis protein, putative transporter. | Urease accessory protein; Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly. Belongs to the UreE family. | 0.760 |
| cbiM | ureF | stu0288 | stu0285 | Cobalamin biosynthesis protein, putative transporter. | Urease accessory protein; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter. | 0.747 |
| cbiM | ureG | stu0288 | stu0286 | Cobalamin biosynthesis protein, putative transporter. | Urease accessory protein; Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG. | 0.800 |
| ecfA1 | cbiM | stu2009 | stu0288 | ABC transporter ATP binding protein; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates (By similarity). Expression of the complex plus RibU in de-energized E.coli allows riboflavin uptake. | Cobalamin biosynthesis protein, putative transporter. | 0.701 |
| ecfA1 | ecfA2 | stu2009 | stu2008 | ABC transporter ATP binding protein; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates (By similarity). Expression of the complex plus RibU in de-energized E.coli allows riboflavin uptake. | ABC transporter ATP binding protein; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates (By similarity). Expression of the complex plus RibU in de-energized E.coli allows riboflavin uptake. | 0.990 |
| ecfA1 | stu0289 | stu2009 | stu0289 | ABC transporter ATP binding protein; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates (By similarity). Expression of the complex plus RibU in de-energized E.coli allows riboflavin uptake. | ABC transporter membrane-spanning protein. | 0.782 |
| ecfA1 | stu0788 | stu2009 | stu0788 | ABC transporter ATP binding protein; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates (By similarity). Expression of the complex plus RibU in de-energized E.coli allows riboflavin uptake. | Conserved hypothetical, predicted membrane protein (TMS6). | 0.750 |
| ecfA2 | cbiM | stu2008 | stu0288 | ABC transporter ATP binding protein; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates (By similarity). Expression of the complex plus RibU in de-energized E.coli allows riboflavin uptake. | Cobalamin biosynthesis protein, putative transporter. | 0.717 |
| ecfA2 | ecfA1 | stu2008 | stu2009 | ABC transporter ATP binding protein; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates (By similarity). Expression of the complex plus RibU in de-energized E.coli allows riboflavin uptake. | ABC transporter ATP binding protein; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates (By similarity). Expression of the complex plus RibU in de-energized E.coli allows riboflavin uptake. | 0.990 |
| ecfA2 | stu0289 | stu2008 | stu0289 | ABC transporter ATP binding protein; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates (By similarity). Expression of the complex plus RibU in de-energized E.coli allows riboflavin uptake. | ABC transporter membrane-spanning protein. | 0.778 |
| ecfA2 | stu0290 | stu2008 | stu0290 | ABC transporter ATP binding protein; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates (By similarity). Expression of the complex plus RibU in de-energized E.coli allows riboflavin uptake. | ABC transporter ATP-binding protein. | 0.795 |
| ecfA2 | stu0788 | stu2008 | stu0788 | ABC transporter ATP binding protein; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates (By similarity). Expression of the complex plus RibU in de-energized E.coli allows riboflavin uptake. | Conserved hypothetical, predicted membrane protein (TMS6). | 0.852 |
| stu0289 | cbiM | stu0289 | stu0288 | ABC transporter membrane-spanning protein. | Cobalamin biosynthesis protein, putative transporter. | 0.998 |
| stu0289 | ecfA1 | stu0289 | stu2009 | ABC transporter membrane-spanning protein. | ABC transporter ATP binding protein; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates (By similarity). Expression of the complex plus RibU in de-energized E.coli allows riboflavin uptake. | 0.782 |
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