Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
stu0535ABC transporter membrane-spanning protein, truncated; Truncated. (71 aa)    
Predicted Functional Partners:
stu0532
ABC transporter membrane-spanning protein, truncated; Truncated.
 
     0.869
stu0533
ABC transporter membrane-spanning protein, truncated; Truncated.
 
     0.834
stu0530
Hypothetical protein.
  
 
 0.782
stu1334
Peptide-4 ABC exporter (Pep4E) family, ATP binding protein.
  
 
 0.638
stu1689
Bacteriocin ABC exporter accessory protein, truncated; Truncated.
  
  
 0.534
stu1690
Bacteriocin ABC exporter accessory protein, truncated; Truncated.
  
  
 0.534
stu0007
Conserved hypothetical protein, S4 domain protein.
   
    0.489
rplJ
50S ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.
       0.441
Your Current Organism:
Streptococcus thermophilus
NCBI taxonomy Id: 264199
Other names: S. thermophilus LMG 18311, Streptococcus thermophilus LMG 18311, Streptococcus thermophilus str. LMG 18311, Streptococcus thermophilus strain LMG 18311
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