Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
stu0601Conserved hypothetical protein, MutT/nudix family protein. (152 aa)    
Predicted Functional Partners:
stu0600
Conserved hypothetical protein.
 
     0.949
clpE
ATP-dependent Clp protease; Belongs to the ClpA/ClpB family.
  
    0.725
stu0604
Conserved hypothetical protein.
 
     0.653
stu1422
Conserved hypothetical, predicted membrane protein (TMS3).
  
     0.605
stu1763
Conserved hypothetical, predicted membrane protein (TMS4).
 
     0.540
stu0135
Hypothetical protein.
  
     0.536
hisK
Histidinol-phosphatase, putative; Belongs to the PHP hydrolase family. HisK subfamily.
 
    0.529
stu1821
Conserved hypothetical protein, truncated; Truncated.
 
     0.525
birA
biotin--acetyl-CoA-carboxylase ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
   
    0.524
stu1822
Conserved hypothetical protein, truncated; Truncated.
 
     0.517
Your Current Organism:
Streptococcus thermophilus
NCBI taxonomy Id: 264199
Other names: S. thermophilus LMG 18311, Streptococcus thermophilus LMG 18311, Streptococcus thermophilus str. LMG 18311, Streptococcus thermophilus strain LMG 18311
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