Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pbp2BPenicillin-binding protein 2B. (704 aa)    
Predicted Functional Partners:
pbp2A
Penicillin-binding protein 2A.
 
 0.997
pbp1A
Penicillin-binding protein 1A.
 
 0.997
pbp1B
Penicillin-binding protein 1B.
 
 0.996
pbp2X
Penicillin binding protein 2X.
  
  
 0.994
rodA
Cell division protein; Belongs to the SEDS family.
 
 
 0.992
divIB
Cell division protein; Cell division protein that may be involved in stabilizing or promoting the assembly of the division complex; Belongs to the FtsQ/DivIB family. DivIB subfamily.
 
 
 0.979
mreC
Rod shape-determining protein MreC; Involved in formation and maintenance of cell shape.
 
 
 0.977
ftsW
Cell division protein; Belongs to the SEDS family.
 
 
 0.975
dacB
D-alanyl-D-alanine-carboxypeptidase.
     
 0.951
stu0078
D-alanyl-D-alanine carboxypeptidase, truncated; Truncated.
  
 
 0.941
Your Current Organism:
Streptococcus thermophilus
NCBI taxonomy Id: 264199
Other names: S. thermophilus LMG 18311, Streptococcus thermophilus LMG 18311, Streptococcus thermophilus str. LMG 18311, Streptococcus thermophilus strain LMG 18311
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