Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
stu0700Hypothetical protein. (129 aa)    
Predicted Functional Partners:
stu1044
Positive transcriptional regulator MutR family.
  
    0.598
stu0701
Conserved hypothetical, predicted membrane protein (TMS6).
  
 
 0.582
stu0699
Endolysin, putative.
 
     0.550
stu0182
Positive transcriptional regulator MutR family.
  
    0.470
stu1827
Oxidoreductase, putative, truncated; Truncated.
 
   
 0.451
stu0294
drug:H+ antiporter-3 (DHA3) family protein.
  
   
 0.443
rgpF
Polysaccharide biosynthesis protein.
  
     0.441
apbE
Lipoprotein involved thiamine biosynthesis; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein.
 
     0.436
stu1828
Oxidoreductase, putative, truncated; Truncated.
 
    0.436
Your Current Organism:
Streptococcus thermophilus
NCBI taxonomy Id: 264199
Other names: S. thermophilus LMG 18311, Streptococcus thermophilus LMG 18311, Streptococcus thermophilus str. LMG 18311, Streptococcus thermophilus strain LMG 18311
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