Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
stu0917Positive transcriptional regulator MutR family. (288 aa)    
Predicted Functional Partners:
stu0918
Unknown protein.
       0.592
stu0919
Unknown protein.
       0.488
stu0184
Conserved hypothetical, predicted membrane protein (TMS10).
 
   
 0.437
labT
Bacteriocin exporter, putative.
 
   
 0.426
sthIR
DNA endonuclease, type III restriction and modification system.
  
     0.415
stu0916
Transcriptional regulator.
  
    0.414
pcsB
Glucan binding protein.
  
    0.411
Your Current Organism:
Streptococcus thermophilus
NCBI taxonomy Id: 264199
Other names: S. thermophilus LMG 18311, Streptococcus thermophilus LMG 18311, Streptococcus thermophilus str. LMG 18311, Streptococcus thermophilus strain LMG 18311
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