Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| cysM1 | gshAB | stu0366 | stu1413 | Cysteine synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family. | Conserved hypothetical protein; Synthesizes glutathione from L-glutamate and L-cysteine via gamma-L-glutamyl-L-cysteine. | 0.850 |
| cysM1 | metB2 | stu0366 | stu0847 | Cysteine synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family. | Cystathionine beta-lyase. | 0.958 |
| cysM1 | pepN | stu0366 | stu1007 | Cysteine synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family. | Lysyl-aminopeptidase, aminopeptidase N. | 0.813 |
| glyA | pepN | stu0755 | stu1007 | Serine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. | Lysyl-aminopeptidase, aminopeptidase N. | 0.848 |
| gshAB | cysM1 | stu1413 | stu0366 | Conserved hypothetical protein; Synthesizes glutathione from L-glutamate and L-cysteine via gamma-L-glutamyl-L-cysteine. | Cysteine synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family. | 0.850 |
| gshAB | metB2 | stu1413 | stu0847 | Conserved hypothetical protein; Synthesizes glutathione from L-glutamate and L-cysteine via gamma-L-glutamyl-L-cysteine. | Cystathionine beta-lyase. | 0.926 |
| gshAB | pepN | stu1413 | stu1007 | Conserved hypothetical protein; Synthesizes glutathione from L-glutamate and L-cysteine via gamma-L-glutamyl-L-cysteine. | Lysyl-aminopeptidase, aminopeptidase N. | 0.909 |
| gshAB | pepT | stu1413 | stu1139 | Conserved hypothetical protein; Synthesizes glutathione from L-glutamate and L-cysteine via gamma-L-glutamyl-L-cysteine. | Tripeptidase; Cleaves the N-terminal amino acid of tripeptides. Belongs to the peptidase M20B family. | 0.596 |
| metB2 | cysM1 | stu0847 | stu0366 | Cystathionine beta-lyase. | Cysteine synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family. | 0.958 |
| metB2 | gshAB | stu0847 | stu1413 | Cystathionine beta-lyase. | Conserved hypothetical protein; Synthesizes glutathione from L-glutamate and L-cysteine via gamma-L-glutamyl-L-cysteine. | 0.926 |
| metB2 | pepN | stu0847 | stu1007 | Cystathionine beta-lyase. | Lysyl-aminopeptidase, aminopeptidase N. | 0.900 |
| metB2 | pepXP | stu0847 | stu1672 | Cystathionine beta-lyase. | X-prolyl dipeptidyl peptidase; Removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline; Belongs to the peptidase S15 family. | 0.489 |
| pepM | pepN | stu1557 | stu1007 | Methionine aminopeptidase; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily. | Lysyl-aminopeptidase, aminopeptidase N. | 0.851 |
| pepM | pepO | stu1557 | stu1885 | Methionine aminopeptidase; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily. | Endopeptidase O. | 0.705 |
| pepM | pepP | stu1557 | stu1742 | Methionine aminopeptidase; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily. | Aminopeptidase P; XAA-pro aminopeptidase; Belongs to the peptidase M24B family. | 0.807 |
| pepM | pepQ | stu1557 | stu0629 | Methionine aminopeptidase; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily. | Dipeptidase; Belongs to the peptidase M24B family. | 0.807 |
| pepM | pepT | stu1557 | stu1139 | Methionine aminopeptidase; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily. | Tripeptidase; Cleaves the N-terminal amino acid of tripeptides. Belongs to the peptidase M20B family. | 0.812 |
| pepM | pepXP | stu1557 | stu1672 | Methionine aminopeptidase; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily. | X-prolyl dipeptidyl peptidase; Removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline; Belongs to the peptidase S15 family. | 0.768 |
| pepN | cysM1 | stu1007 | stu0366 | Lysyl-aminopeptidase, aminopeptidase N. | Cysteine synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family. | 0.813 |
| pepN | glyA | stu1007 | stu0755 | Lysyl-aminopeptidase, aminopeptidase N. | Serine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. | 0.848 |
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