Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
stu1059D-alanyl-D-alanine-carboxypeptidase, penicillin-binding protein, truncated; Truncated. (313 aa)    
Predicted Functional Partners:
stu0078
D-alanyl-D-alanine carboxypeptidase, truncated; Truncated.
 
     0.717
stu1057
D-alanyl-D-alanine-carboxypeptidase, penicillin-binding protein, truncated; Truncated.
       0.705
stu1058
D-alanyl-D-alanine-carboxypeptidase, penicillin-binding protein, truncated; Truncated.
       0.705
stu0441
Conserved hypothetical protein; Belongs to the UPF0346 family.
 
     0.502
stu1056
Conserved hypothetical, predicted membrane protein (TMS4); Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family.
 
     0.468
Your Current Organism:
Streptococcus thermophilus
NCBI taxonomy Id: 264199
Other names: S. thermophilus LMG 18311, Streptococcus thermophilus LMG 18311, Streptococcus thermophilus str. LMG 18311, Streptococcus thermophilus strain LMG 18311
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