Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| cmk | fer | stu1135 | stu1137 | Cytidylate kinase. | Ferredoxin. | 0.632 |
| cmk | infC | stu1135 | stu1134 | Cytidylate kinase. | Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins. | 0.599 |
| cmk | rpmI | stu1135 | stu1133 | Cytidylate kinase. | 50S ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family. | 0.494 |
| cmk | stu1136 | stu1135 | stu1136 | Cytidylate kinase. | Unknown protein. | 0.752 |
| divIC | stu1136 | stu0008 | stu1136 | Cell-cycle protein, MesJ/Ycf62 family, putative. | Unknown protein. | 0.527 |
| divIC | stu1602 | stu0008 | stu1602 | Cell-cycle protein, MesJ/Ycf62 family, putative. | Conserved hypothetical protein. | 0.592 |
| fer | cmk | stu1137 | stu1135 | Ferredoxin. | Cytidylate kinase. | 0.632 |
| fer | infC | stu1137 | stu1134 | Ferredoxin. | Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins. | 0.472 |
| fer | rpmI | stu1137 | stu1133 | Ferredoxin. | 50S ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family. | 0.408 |
| fer | stu1136 | stu1137 | stu1136 | Ferredoxin. | Unknown protein. | 0.614 |
| infC | cmk | stu1134 | stu1135 | Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins. | Cytidylate kinase. | 0.599 |
| infC | fer | stu1134 | stu1137 | Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins. | Ferredoxin. | 0.472 |
| infC | rpmI | stu1134 | stu1133 | Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins. | 50S ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family. | 0.971 |
| infC | stu1136 | stu1134 | stu1136 | Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins. | Unknown protein. | 0.524 |
| rpmI | cmk | stu1133 | stu1135 | 50S ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family. | Cytidylate kinase. | 0.494 |
| rpmI | fer | stu1133 | stu1137 | 50S ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family. | Ferredoxin. | 0.408 |
| rpmI | infC | stu1133 | stu1134 | 50S ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family. | Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins. | 0.971 |
| rpmI | stu1136 | stu1133 | stu1136 | 50S ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family. | Unknown protein. | 0.467 |
| stu0248 | stu1136 | stu0248 | stu1136 | Conserved hypothetical protein, putative hydrolase. | Unknown protein. | 0.479 |
| stu0634 | stu1136 | stu0634 | stu1136 | Conserved hypothetical protein. | Unknown protein. | 0.588 |
page 1 of 2