Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
argH | gltA | stu1812 | stu1267 | Argininosuccinate lyase. | Citrate synthase; Belongs to the citrate synthase family. | 0.835 |
argH | icd | stu1812 | stu1266 | Argininosuccinate lyase. | Isocitrate dehydrogenase. | 0.828 |
argH | purB | stu1812 | stu0045 | Argininosuccinate lyase. | Adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily. | 0.917 |
aspC2 | gdhA | stu1636 | stu0430 | Aspartate aminotransferase, putative. | NADP-specific glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | 0.912 |
aspC2 | icd | stu1636 | stu1266 | Aspartate aminotransferase, putative. | Isocitrate dehydrogenase. | 0.827 |
citB | gltA | stu1268 | stu1267 | Aconitate hydratase; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate. | Citrate synthase; Belongs to the citrate synthase family. | 0.999 |
citB | icd | stu1268 | stu1266 | Aconitate hydratase; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate. | Isocitrate dehydrogenase. | 0.998 |
citB | leuB | stu1268 | stu1202 | Aconitate hydratase; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate. | 3-isopropylmalate dehydrogenase; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate. Belongs to the isocitrate and isopropylmalate dehydrogenases family. LeuB type 1 subfamily. | 0.529 |
gdhA | aspC2 | stu0430 | stu1636 | NADP-specific glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | Aspartate aminotransferase, putative. | 0.912 |
gdhA | gltA | stu0430 | stu1267 | NADP-specific glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | Citrate synthase; Belongs to the citrate synthase family. | 0.894 |
gdhA | icd | stu0430 | stu1266 | NADP-specific glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | Isocitrate dehydrogenase. | 0.916 |
gdhA | stu0462 | stu0430 | stu0462 | NADP-specific glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | Conserved hypothetical protein. | 0.937 |
gltA | argH | stu1267 | stu1812 | Citrate synthase; Belongs to the citrate synthase family. | Argininosuccinate lyase. | 0.835 |
gltA | citB | stu1267 | stu1268 | Citrate synthase; Belongs to the citrate synthase family. | Aconitate hydratase; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate. | 0.999 |
gltA | gdhA | stu1267 | stu0430 | Citrate synthase; Belongs to the citrate synthase family. | NADP-specific glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | 0.894 |
gltA | hdhL | stu1267 | stu0644 | Citrate synthase; Belongs to the citrate synthase family. | L-2-hydroxyisocaproate dehydrogenase; Belongs to the LDH/MDH superfamily. | 0.784 |
gltA | icd | stu1267 | stu1266 | Citrate synthase; Belongs to the citrate synthase family. | Isocitrate dehydrogenase. | 0.985 |
gltA | ldh | stu1267 | stu1280 | Citrate synthase; Belongs to the citrate synthase family. | L-lactate dehydrogenase; Catalyzes the conversion of lactate to pyruvate. Belongs to the LDH/MDH superfamily. LDH family. | 0.784 |
gltA | leuB | stu1267 | stu1202 | Citrate synthase; Belongs to the citrate synthase family. | 3-isopropylmalate dehydrogenase; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate. Belongs to the isocitrate and isopropylmalate dehydrogenases family. LeuB type 1 subfamily. | 0.754 |
gltA | purB | stu1267 | stu0045 | Citrate synthase; Belongs to the citrate synthase family. | Adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily. | 0.800 |
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