Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
stu1283Hypothetical protein. (163 aa)    
Predicted Functional Partners:
pdxK
Pyridoxal/pyridoxine/pyridoxamine kinase; Belongs to the pyridoxine kinase family.
 
     0.847
stu0311
ABC transporter membrane-spanning protein, truncated; Truncated.
 
 
 0.582
stu1282
ABC transporter, drug resistance ATPase-1 (Drug RA1) family, ATP binding protein.
       0.574
stu1285
Unknown, predicted membrane protein (TMS5).
       0.544
stu1052
Hypothetical protein, truncated; Truncated.
 
     0.470
stu0856
Type I restriction-modification system restriction subunit, truncated; Truncated.
  
     0.435
stu1607
Conserved hypothetical protein.
  
     0.425
stu1044
Positive transcriptional regulator MutR family.
  
     0.411
stu1288
Transcriptional regulator, putative, truncated; Truncated.
       0.403
Your Current Organism:
Streptococcus thermophilus
NCBI taxonomy Id: 264199
Other names: S. thermophilus LMG 18311, Streptococcus thermophilus LMG 18311, Streptococcus thermophilus str. LMG 18311, Streptococcus thermophilus strain LMG 18311
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