STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rr06Response regulator (homolog to RR11 Spn). (200 aa)    
Predicted Functional Partners:
hk06
Sensor histidine kinase (homolog to HK11 Spn).
 0.999
stu1327
ABC transporter membrane-spanning protein.
 
  
 0.952
hk08
Sensor histidine kinase (homolog to HK03 Spn).
 
 
 0.918
stu1328
ABC transporter ATP binding protein.
  
 0.891
rr07
Response regulator (homolog to RR01Spn & Sth).
 
 
 0.859
rgpA
Polysaccharide biosynthesis protein/putative rhamnosyl transferase.
      
 0.764
rgpF
Polysaccharide biosynthesis protein.
      
 0.760
rgpB
Polysaccharide biosynthesis protein/putative rhamnosyl transferase.
      
 0.748
rgpC
Polysaccharide ABC exporter membrane-spanning protein.
      
 0.730
rpoD
DNA directed RNA polymerase sigma 42 protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
      
 0.712
Your Current Organism:
Streptococcus thermophilus
NCBI taxonomy Id: 264199
Other names: S. thermophilus LMG 18311, Streptococcus thermophilus LMG 18311, Streptococcus thermophilus str. LMG 18311, Streptococcus thermophilus strain LMG 18311
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.