Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
stu1434Conserved hypothetical protein, Cof family. (264 aa)    
Predicted Functional Partners:
stu1433
Conserved hypothetical protein, Cof family.
 
    
0.900
ftsY
Signal recognition particle receptor (docking protein); Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC).
       0.848
stu0335
Conserved hypothetical protein, Cof family.
 
    0.772
stu0217
Conserved hypothetical protein, truncated; Truncated.
 
     0.746
stu1436
ABC transporter ATP binding protein.
  
   0.556
stu1437
ABC transporter membrane-spanning protein.
   
   0.555
stu1435
Transcriptional regulator, GntR family, putative.
       0.522
stu1332
Hypothetical protein.
 
     0.517
rncS
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
  
    0.487
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
  
    0.470
Your Current Organism:
Streptococcus thermophilus
NCBI taxonomy Id: 264199
Other names: S. thermophilus LMG 18311, Streptococcus thermophilus LMG 18311, Streptococcus thermophilus str. LMG 18311, Streptococcus thermophilus strain LMG 18311
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