Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
stu1783IS657, transposase, IS200 family, truncated; Truncated. (82 aa)    
Predicted Functional Partners:
stu1130
IS657, transposase, IS200 family, truncated; Truncated.
 
     0.772
stu1784
IS861, transposase (orf1), IS3 family, truncated; Truncated.
       0.539
pgk
Phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family.
       0.422
stu1785
IS861, transposase (orf1), IS3 family, truncated; Truncated.
       0.420
stu1786
IS861, transposase (orf2), IS3 family, truncated; Truncated.
       0.420
stu1787
IS861, transposase (orf2), IS3 family, truncated; Truncated.
       0.406
Your Current Organism:
Streptococcus thermophilus
NCBI taxonomy Id: 264199
Other names: S. thermophilus LMG 18311, Streptococcus thermophilus LMG 18311, Streptococcus thermophilus str. LMG 18311, Streptococcus thermophilus strain LMG 18311
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