STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpmHStrongly similar to 50S ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family. (45 aa)    
Predicted Functional Partners:
rpsT
Putative 30S ribosomal protein S20; Binds directly to 16S ribosomal RNA.
  
 
 0.995
rplU
Probable 50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
  
 
 0.995
rpmB
Similar to ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
   
 
 0.995
rpsP
Similar to 30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.
   
 
 0.993
rpmF
Similar to 50S ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.
   
 
 0.993
rl13
Probable large subunit ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
   
 
 0.992
rpsN
Probable ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
  
 
 0.991
rpsU
Strongly similar to 30S ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.
   
 
 0.989
rpsO
Probable 30S ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.
   
 
 0.989
rpmI
Strongly similar to 50S ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family.
  
 
 0.989
Your Current Organism:
Protochlamydia amoebophila
NCBI taxonomy Id: 264201
Other names: C. Protochlamydia amoebophila UWE25, Candidatus Protochlamydia amoebophila UWE25, Candidatus Protochlamydia amoebophila str. UWE25, Candidatus Protochlamydia amoebophila strain UWE25, Parachlamydia sp. UWE25, Parachlamydia-related symbiont UWE25, endosymbiont of Acanthamoeba sp. UWE25
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