STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZMO0019PFAM: Heparinase II/III family protein; KEGG: swi:Swit_1942 heparinase II/III family protein. (588 aa)    
Predicted Functional Partners:
ZMO0018
KEGG: sal:Sala_3128 ribulose-phosphate 3-epimerase; PFAM: ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
       0.831
ZMO1545
PFAM: heat shock protein DnaJ domain protein; KEGG: swi:Swit_2332 heat shock protein DnaJ domain-containing protein.
  
     0.735
ZMO0228
PFAM: polysaccharide biosynthesis protein; KEGG: swi:Swit_0449 polysaccharide biosynthesis protein.
 
     0.709
ZMO0407
PFAM: GcrA cell cycle regulator; KEGG: swi:Swit_4580 GcrA cell cycle regulator.
  
     0.709
ZMO1701
Outer membrane lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
  
     0.709
ZMO0017
PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: swi:Swit_1940 Fmu (Sun) domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
 
    0.673
ZMO0495
PFAM: protein of unknown function DUF490; KEGG: swi:Swit_4828 hypothetical protein.
  
     0.673
ZMO1319
Hypothetical protein; KEGG: swi:Swit_0407 TPR repeat-containing protein.
  
     0.669
ZMO1434
Hypothetical protein; KEGG: swi:Swit_2851 secreted (periplasmic)-like protein.
  
     0.663
ZMO1173
PFAM: protein of unknown function DUF490; KEGG: sal:Sala_1561 hypothetical protein.
  
     0.652
Your Current Organism:
Zymomonas mobilis ZM4
NCBI taxonomy Id: 264203
Other names: Z. mobilis subsp. mobilis ZM4 = ATCC 31821, Zymomonas mobilis subsp. mobilis ATCC 31821, Zymomonas mobilis subsp. mobilis ATCC 31821 = ZM4, Zymomonas mobilis subsp. mobilis ZM4, Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.