STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZMO0020PFAM: protein of unknown function DUF162; KEGG: gox:GOX1358 hypothetical protein. (198 aa)    
Predicted Functional Partners:
ZMO0021
PFAM: protein of unknown function DUF162; KEGG: gox:GOX1357 putative electron transport protein.
 
 
 0.999
ZMO0022
PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: gox:GOX1356 oxidoreductase, iron-sulphur binding subunit.
 
 
 0.992
ZMO1576
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rle:pRL120546 putative short-chain dehydrogenase/oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
   
  
 0.545
ZMO1399
PFAM: fatty acid hydroxylase; KEGG: swi:Swit_3907 fatty acid hydroxylase.
  
   
 0.526
ZMO0157
PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: bid:Bind_0622 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding.
     
 0.475
ZMO0788
Gluconate 2-dehydrogenase (acceptor); KEGG: bur:Bcep18194_C7344 cytochrome c, class I; PFAM: cytochrome c class I.
   
  
 0.471
ybeY
Protein of unknown function UPF0054; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
      
 0.457
ZMO0268
Hypothetical protein.
      
 0.457
ZMO0270
Hypothetical protein.
      
 0.457
ZMO0384
Hypothetical protein.
      
 0.457
Your Current Organism:
Zymomonas mobilis ZM4
NCBI taxonomy Id: 264203
Other names: Z. mobilis subsp. mobilis ZM4 = ATCC 31821, Zymomonas mobilis subsp. mobilis ATCC 31821, Zymomonas mobilis subsp. mobilis ATCC 31821 = ZM4, Zymomonas mobilis subsp. mobilis ZM4, Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821
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