STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZMO0059KEGG: lbr:LVIS_0413 glycerate kinase; PFAM: glycerate kinase; Belongs to the glycerate kinase type-1 family. (382 aa)    
Predicted Functional Partners:
gpmA
Phosphoglycerate mutase 1 family; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate; Belongs to the phosphoglycerate mutase family. BPG- dependent PGAM subfamily.
     
 0.900
ZMO1883
PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: mmw:Mmwyl1_3293 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding.
     
  0.900
ZMO1689
TIGRFAM: dihydroorotase, multifunctional complex type; KEGG: swi:Swit_2737 dihydroorotase; PFAM: amidohydrolase.
 
    0.881
tadA
CMP/dCMP deaminase zinc-binding protein; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.
 
 
    0.708
murD
UDP-N-acetylmuramoylalanine/D-glutamate ligase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family.
 
      0.567
ZMO0057
KEGG: seh:SeHA_C3506 phage protein.
       0.509
gntP
KEGG: pfo:Pfl01_0721 gluconate transporter; TIGRFAM: gluconate transporter; PFAM: Gluconate transporter; Citrate transporter; Belongs to the GntP permease family.
  
  
 0.490
Your Current Organism:
Zymomonas mobilis ZM4
NCBI taxonomy Id: 264203
Other names: Z. mobilis subsp. mobilis ZM4 = ATCC 31821, Zymomonas mobilis subsp. mobilis ATCC 31821, Zymomonas mobilis subsp. mobilis ATCC 31821 = ZM4, Zymomonas mobilis subsp. mobilis ZM4, Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821
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