STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZMO0064PFAM: Carbohydrate-selective porin OprB; KEGG: bid:Bind_2156 carbohydrate-selective porin OprB. (553 aa)    
Predicted Functional Partners:
ZMO0847
PFAM: Carbohydrate-selective porin OprB; KEGG: rso:RSp1632 putative porin B precursor outer (glucose porin) transmembrane protein.
  
  
 
0.677
ZMO1859
PFAM: Carbohydrate-selective porin OprB; KEGG: mpo:Mpop_1190 carbohydrate-selective porin OprB.
  
  
 
0.675
ZMO0975
KEGG: gbe:GbCGDNIH1_0232 hypothetical membrane spanning protein.
  
     0.666
ZMO0978
PFAM: periplasmic binding protein; KEGG: swi:Swit_0259 periplasmic binding protein.
      
 0.641
ZMO1848
PFAM: periplasmic binding protein; KEGG: bid:Bind_2004 putative ABC-type Fe3+ transport system periplasmic component.
  
   
 0.597
ZMO1354
PFAM: OmpA domain protein transmembrane region-containing protein; OmpA/MotB domain protein; KEGG: swi:Swit_0853 OmpA/MotB domain-containing protein.
     
 0.591
ZMO0973
TIGRFAM: hopanoid biosynthesis associated radical SAM protein HpnJ; PFAM: Radical SAM domain protein; KEGG: met:M446_6339 hopanoid biosynthesis associated radical SAM protein HpnJ; SMART: Elongator protein 3/MiaB/NifB.
  
     0.574
ZMO0066
Hypothetical protein.
       0.513
ZMO0902
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: gdj:Gdia_1456 TonB-dependent receptor.
  
     0.492
ZMO0972
KEGG: bpy:Bphyt_2200 hopanoid biosynthesis associated glycosyl transferase protein HpnI; TIGRFAM: hopanoid biosynthesis associated glycosyl transferase protein HpnI; PFAM: glycosyl transferase family 2.
  
     0.469
Your Current Organism:
Zymomonas mobilis ZM4
NCBI taxonomy Id: 264203
Other names: Z. mobilis subsp. mobilis ZM4 = ATCC 31821, Zymomonas mobilis subsp. mobilis ATCC 31821, Zymomonas mobilis subsp. mobilis ATCC 31821 = ZM4, Zymomonas mobilis subsp. mobilis ZM4, Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821
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