STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ZMO0100Transcriptional regulator, HxlR family; PFAM: helix-turn-helix HxlR type; KEGG: gox:GOX0912 hypothetical protein. (126 aa)    
Predicted Functional Partners:
ZMO0101
PFAM: NAD-dependent epimerase/dehydratase; KEGG: gox:GOX0911 putative oxidoreductase.
     
 0.808
ZMO1723
PFAM: protein of unknown function DUF152; KEGG: swi:Swit_4772 hypothetical protein; Belongs to the multicopper oxidase YfiH/RL5 family.
      
 0.659
ZMO1389
PFAM: cytochrome c biogenesis protein transmembrane region; KEGG: swi:Swit_0542 cytochrome c biogenesis protein, transmembrane region.
      
 0.556
ZMO1875
PFAM: protein of unknown function DUF1476; KEGG: sal:Sala_0355 hypothetical protein.
      
 0.550
ZMO0760
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rce:RC1_0598 lactoylglutathione lyase.
      
 0.549
ZMO1722
KEGG: rpt:Rpal_2166 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase; TIGRFAM: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.
      
 0.547
ZMO1429
KEGG: cvi:CV_2848 outer membrane component of multidrug efflux pump; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein.
      
 0.542
ZMO0102
Hypothetical protein.
       0.486
ZMO1432
PFAM: Fusaric acid resistance protein conserved region; KEGG: bpt:Bpet2606 hypothetical protein.
      
 0.479
ZMO1136
KEGG: gdj:Gdia_0285 cytochrome-c peroxidase; PFAM: Di-haem cytochrome c peroxidase.
      
 0.476
Your Current Organism:
Zymomonas mobilis ZM4
NCBI taxonomy Id: 264203
Other names: Z. mobilis subsp. mobilis ZM4 = ATCC 31821, Zymomonas mobilis subsp. mobilis ATCC 31821, Zymomonas mobilis subsp. mobilis ATCC 31821 = ZM4, Zymomonas mobilis subsp. mobilis ZM4, Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821
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