STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZMO0116KEGG: sru:SRU_0748 rrf2 family protein (putative transcriptional regulator); TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074. (145 aa)    
Predicted Functional Partners:
ZMO0591
KEGG: swi:Swit_0002 NifU-like involved in Fe-S cluster formation.
  
  
 0.778
hcp
Hybrid cluster protein; Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O.
     
 0.629
ZMO0859
PFAM: aminotransferase class V; KEGG: swi:Swit_0052 aminotransferase, class V.
  
  
 0.549
ZMO1022
KEGG: swi:Swit_0051 cysteine desulfurase; PFAM: aminotransferase class V.
  
  
 0.549
ZMO1834
Cysteine desulfurase NifS; Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine.
  
  
 0.549
ZMO0429
KEGG: swi:Swit_2913 iron-sulfur cluster assembly accessory protein; TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; Belongs to the HesB/IscA family.
  
  
 0.542
ZMO0115
PFAM: aminotransferase class IV; KEGG: mex:Mext_3905 aminotransferase class IV.
 
     0.526
ZMO1831
PFAM: NifQ family protein; KEGG: gdj:Gdia_1561 NifQ family protein.
  
  
 0.481
ZMO0635
Flagellar motor switch protein FliG; FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation.
    
   0.475
ZMO0114
KEGG: mpo:Mpop_4378 glutamine amidotransferase of anthranilate synthase; TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I.
       0.444
Your Current Organism:
Zymomonas mobilis ZM4
NCBI taxonomy Id: 264203
Other names: Z. mobilis subsp. mobilis ZM4 = ATCC 31821, Zymomonas mobilis subsp. mobilis ATCC 31821, Zymomonas mobilis subsp. mobilis ATCC 31821 = ZM4, Zymomonas mobilis subsp. mobilis ZM4, Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821
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