STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZMO0134PFAM: Sel1 domain protein repeat-containing protein; KEGG: min:Minf_1656 TPR repeat protein, SEL1 subfamily. (166 aa)    
Predicted Functional Partners:
ZMO0135
PFAM: Sel1 domain protein repeat-containing protein; KEGG: min:Minf_1656 TPR repeat protein, SEL1 subfamily.
 
   
0.598
ZMO0133
PFAM: Sel1 domain protein repeat-containing protein; KEGG: aas:Aasi_0854 hypothetical protein.
 
   
0.577
ZMO0136
PFAM: Sel1 domain protein repeat-containing protein; KEGG: min:Minf_1697 TPR repeat protein, SEL1 subfamily.
 
   
0.539
ZMO0169
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: xau:Xaut_1054 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
      
 0.524
ZMO1934
PFAM: N-6 DNA methylase; protein of unknown function DUF450; KEGG: gbm:Gbem_3247 N-6 DNA methylase.
    
 
 0.478
ZMO0176
Transketolase; KEGG: swi:Swit_2601 transketolase; TIGRFAM: transketolase; PFAM: Transketolase domain protein; Transketolase central region; Belongs to the transketolase family.
   
  
 0.459
ZMO1886
KEGG: bid:Bind_2181 membrane protein AbrB duplication; TIGRFAM: membrane protein AbrB duplication; PFAM: putative ammonia monooxygenase.
      
 0.459
ZMO2012
KEGG: swi:Swit_3899 hypothetical protein.
      
 0.459
ZMO0170
KEGG: gdi:GDI3757 putative glycerophosphoryl diester phosphodiesterase.
      
 0.456
ftsH
ATP-dependent metalloprotease FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family.
    
 
 0.456
Your Current Organism:
Zymomonas mobilis ZM4
NCBI taxonomy Id: 264203
Other names: Z. mobilis subsp. mobilis ZM4 = ATCC 31821, Zymomonas mobilis subsp. mobilis ATCC 31821, Zymomonas mobilis subsp. mobilis ATCC 31821 = ZM4, Zymomonas mobilis subsp. mobilis ZM4, Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821
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