STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZMO0145PFAM: peptidase M28; KEGG: gdj:Gdia_1817 peptidase M28. (553 aa)    
Predicted Functional Partners:
ZMO1593
PFAM: peptidase M61 domain protein; KEGG: swi:Swit_0105 peptidase M61 domain-containing protein.
  
  
 0.780
ZMO1522
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: swi:Swit_3144 TonB-dependent receptor.
  
     0.765
ZMO1040
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: gox:GOX0945 TonB-dependent outer membrane receptor.
  
     0.743
ZMO0912
PFAM: protein of unknown function DUF885; KEGG: pzu:PHZ_c0713 hypothetical protein.
  
     0.739
ZMO1167
PFAM: peptidase S15; X-Pro dipeptidyl-peptidase domain protein; KEGG: cak:Caul_3451 peptidase S15.
  
    0.702
ZMO0142
Alanine racemase domain protein; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family.
     
 0.697
ZMO1408
PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; peptidase S9B dipeptidylpeptidase IV domain protein; KEGG: nar:Saro_1409 dipeptidyl-peptidase IV.
  
    0.688
ZMO1422
PFAM: peptidase M16 domain protein; KEGG: swi:Swit_3129 peptidase M16 domain-containing protein.
  
   
 0.681
ZMO0144
L-aspartate oxidase; Catalyzes the oxidation of L-aspartate to iminoaspartate.
       0.658
tmk
dTMP kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.
 
      0.647
Your Current Organism:
Zymomonas mobilis ZM4
NCBI taxonomy Id: 264203
Other names: Z. mobilis subsp. mobilis ZM4 = ATCC 31821, Zymomonas mobilis subsp. mobilis ATCC 31821, Zymomonas mobilis subsp. mobilis ATCC 31821 = ZM4, Zymomonas mobilis subsp. mobilis ZM4, Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821
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