STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZMO0157PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: bid:Bind_0622 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding. (309 aa)    
Predicted Functional Partners:
ruvB
Holliday junction DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing.
       0.605
ZMO0788
Gluconate 2-dehydrogenase (acceptor); KEGG: bur:Bcep18194_C7344 cytochrome c, class I; PFAM: cytochrome c class I.
  
  
 0.584
ZMO0020
PFAM: protein of unknown function DUF162; KEGG: gox:GOX1358 hypothetical protein.
     
 0.475
ZMO1222
3-oxoacyl-(acyl-carrier-protein) reductase; Catalyzes the NADPH-dependent reduction of beta-ketoacyl-ACP substrates to beta-hydroxyacyl-ACP products, the first reductive step in the elongation cycle of fatty acid biosynthesis. Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
  
 
 0.474
ZMO0021
PFAM: protein of unknown function DUF162; KEGG: gox:GOX1357 putative electron transport protein.
  
  
 0.472
ZMO1885
PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: gox:GOX2684 NAD(P)H-dependent 2-cyclohexen-1-one reductase.
   
  
 0.468
ZMO1346
PFAM: protein of unknown function DUF6 transmembrane; KEGG: sal:Sala_0497 hypothetical protein.
   
  
 0.466
proC-2
Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.
  
  
 0.465
murB
UDP-N-acetylenolpyruvoylglucosamine reductase; Cell wall formation.
      
 0.464
ZMO1254
Redoxin domain protein; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: swi:Swit_3991 periplasmic protein thiol--disulphide oxidoreductase DsbE.
     
 0.464
Your Current Organism:
Zymomonas mobilis ZM4
NCBI taxonomy Id: 264203
Other names: Z. mobilis subsp. mobilis ZM4 = ATCC 31821, Zymomonas mobilis subsp. mobilis ATCC 31821, Zymomonas mobilis subsp. mobilis ATCC 31821 = ZM4, Zymomonas mobilis subsp. mobilis ZM4, Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821
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