STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZMO0161PFAM: MotA/TolQ/ExbB proton channel; KEGG: sal:Sala_0331 MotA/TolQ/ExbB proton channel. (236 aa)    
Predicted Functional Partners:
ZMO0162
Protein TolR; KEGG: sal:Sala_0330 biopolymer transport protein ExbD/TolR; TIGRFAM: protein TolR; PFAM: Biopolymer transport protein ExbD/TolR.
 
 
 0.991
ZMO1715
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: swi:Swit_0119 biopolymer transport-like protein.
 
 
 0.965
ZMO0164
KEGG: swi:Swit_2134 hypothetical protein.
  
 
 0.959
tolB
Tol-Pal system beta propeller repeat protein TolB; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
 
  
 0.910
ZMO2025
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: swi:Swit_0120 biopolymer transport protein ExbD/TolR.
 
 
 0.902
ZMO0160
PFAM: thioesterase superfamily protein; KEGG: eli:ELI_09535 thioesterase.
 
  
 0.897
pal
Peptidoglycan-associated lipoprotein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
 
   
 0.896
ZMO1717
KEGG: sal:Sala_0808 TonB-like protein; TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein.
  
 
 0.787
ZMO1062
Hypothetical protein.
  
 
 0.725
ZMO0275
KEGG: swi:Swit_2906 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
  
     0.701
Your Current Organism:
Zymomonas mobilis ZM4
NCBI taxonomy Id: 264203
Other names: Z. mobilis subsp. mobilis ZM4 = ATCC 31821, Zymomonas mobilis subsp. mobilis ATCC 31821, Zymomonas mobilis subsp. mobilis ATCC 31821 = ZM4, Zymomonas mobilis subsp. mobilis ZM4, Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821
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