STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZMO0170KEGG: gdi:GDI3757 putative glycerophosphoryl diester phosphodiesterase. (183 aa)    
Predicted Functional Partners:
ZMO0169
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: xau:Xaut_1054 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
      
 0.789
ZMO1934
PFAM: N-6 DNA methylase; protein of unknown function DUF450; KEGG: gbm:Gbem_3247 N-6 DNA methylase.
      
 0.782
ZMO1312
PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; SurA domain; KEGG: swi:Swit_0410 PpiC-type peptidyl-prolyl cis-trans isomerase.
   
 
 0.765
ZMO1993
PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: swi:Swit_2841 alcohol dehydrogenase.
   
  
 0.579
ZMO1437
PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: pfl:PFL_2679 amino acid transporter LysE.
      
 0.568
ZMO1754
PFAM: Aldehyde Dehydrogenase; KEGG: bxe:Bxe_B2363 putative aldehyde dehydrogenase.
  
 
 0.500
guaB
Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.
     
 0.495
rnc
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
    
 
 0.482
ZMO0133
PFAM: Sel1 domain protein repeat-containing protein; KEGG: aas:Aasi_0854 hypothetical protein.
     
 0.463
ZMO2012
KEGG: swi:Swit_3899 hypothetical protein.
      
 0.463
Your Current Organism:
Zymomonas mobilis ZM4
NCBI taxonomy Id: 264203
Other names: Z. mobilis subsp. mobilis ZM4 = ATCC 31821, Zymomonas mobilis subsp. mobilis ATCC 31821, Zymomonas mobilis subsp. mobilis ATCC 31821 = ZM4, Zymomonas mobilis subsp. mobilis ZM4, Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821
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