STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZMO0192PFAM: peptidase M48 Ste24p; KEGG: nar:Saro_0230 peptidase M48, Ste24p. (452 aa)    
Predicted Functional Partners:
ZMO1665
PFAM: Peptidase M23; KEGG: sal:Sala_0575 peptidase M23B.
 
 
   0.904
ZMO0191
PFAM: DSBA oxidoreductase; KEGG: swi:Swit_3850 DsbA oxidoreductase.
 
    0.800
rne
Ribonuclease, Rne/Rng family; Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs. Belongs to the RNase E/G family. RNase E subfamily.
 
    0.630
ZMO0654
KEGG: swi:Swit_2751 polysaccharide deacetylase; PFAM: glycosyl transferase family 2; polysaccharide deacetylase; SMART: chitinase II.
     
 0.514
ZMO1875
PFAM: protein of unknown function DUF1476; KEGG: sal:Sala_0355 hypothetical protein.
  
     0.501
ZMO0752
KEGG: swi:Swit_0063 hypothetical protein.
  
     0.496
ZMO2023
PFAM: MltA domain protein; 3D domain protein; KEGG: swi:Swit_3831 MltA domain-containing protein.
  
    0.494
ZMO1636
PFAM: import inner membrane translocase subunit Tim44; KEGG: swi:Swit_3830 import inner membrane translocase, subunit Tim44.
  
     0.485
bamA
Outer membrane protein assembly complex, YaeT protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
   
 0.479
ZMO1102
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: swi:Swit_2675 PAS/PAC sensor signal transduction histidine kinase.
  
     0.428
Your Current Organism:
Zymomonas mobilis ZM4
NCBI taxonomy Id: 264203
Other names: Z. mobilis subsp. mobilis ZM4 = ATCC 31821, Zymomonas mobilis subsp. mobilis ATCC 31821, Zymomonas mobilis subsp. mobilis ATCC 31821 = ZM4, Zymomonas mobilis subsp. mobilis ZM4, Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.