STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZMO0219PFAM: helicase domain protein; KEGG: swi:Swit_3540 helicase domain-containing protein. (943 aa)    
Predicted Functional Partners:
ZMO0221
PFAM: transcription factor CarD; KEGG: swi:Swit_3537 CarD family transcriptional regulator.
 
     0.722
ZMO0407
PFAM: GcrA cell cycle regulator; KEGG: swi:Swit_4580 GcrA cell cycle regulator.
  
     0.646
lysS
TIGRFAM: lysyl-tRNA synthetase; KEGG: swi:Swit_3566 lysyl-tRNA synthetase; PFAM: Lysyl-tRNA synthetase class 1c; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
     0.593
ZMO0220
4Fe-4S ferredoxin iron-sulfur binding domain protein; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.
       0.590
ZMO1543
TIGRFAM: cobalt chelatase, pCobT subunit; KEGG: swi:Swit_2329 cobalt chelatase, pCobT subunit; PFAM: Cobalt chelatase CobT subunit.
  
     0.568
ZMO1545
PFAM: heat shock protein DnaJ domain protein; KEGG: swi:Swit_2332 heat shock protein DnaJ domain-containing protein.
  
     0.567
ZMO1729
KEGG: sal:Sala_0529 hypothetical protein.
  
     0.533
ZMO0216
PFAM: Peptidase M23; KEGG: sal:Sala_2738 peptidase M23B.
       0.532
ZMO1395
PFAM: N-formylglutamate amidohydrolase; KEGG: swi:Swit_0136 N-formylglutamate amidohydrolase.
  
     0.472
ZMO0302
Uncharacterized arylsulfate sulfotransferase-like protein involved in siderophore biosynthesis; KEGG: eli:ELI_12295 hypothetical protein.
  
     0.428
Your Current Organism:
Zymomonas mobilis ZM4
NCBI taxonomy Id: 264203
Other names: Z. mobilis subsp. mobilis ZM4 = ATCC 31821, Zymomonas mobilis subsp. mobilis ATCC 31821, Zymomonas mobilis subsp. mobilis ATCC 31821 = ZM4, Zymomonas mobilis subsp. mobilis ZM4, Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821
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