STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZMO0276PFAM: OstA family protein; KEGG: sal:Sala_2341 OstA-like protein. (198 aa)    
Predicted Functional Partners:
ZMO0275
KEGG: swi:Swit_2906 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
  
  
 0.947
lptD
Organic solvent tolerance protein; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.
 
 
 0.908
ZMO0277
PFAM: protein of unknown function DUF1239; KEGG: swi:Swit_2904 hypothetical protein.
 
   
 0.866
ZMO0613
KEGG: swi:Swit_1270 flagellar basal-body rod protein FlgC; TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: protein of unknown function DUF1078 domain protein; Belongs to the flagella basal body rod proteins family.
    
   0.790
ZMO0278
PFAM: 3'-5' exonuclease; KEGG: swi:Swit_2903 3'-5' exonuclease.
       0.759
ZMO0591
KEGG: swi:Swit_0002 NifU-like involved in Fe-S cluster formation.
  
     0.696
ZMO1729
KEGG: sal:Sala_0529 hypothetical protein.
  
     0.686
ZMO0279
KEGG: swi:Swit_2901 cold-shock DNA-binding protein family protein; PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein.
 
     0.591
ZMO0274
RNA polymerase, sigma 54 subunit, RpoN; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
  
 0.579
ZMO0643
PFAM: surface presentation of antigens (SPOA) protein; flagellar motor switch protein FliM; KEGG: swi:Swit_1458 flagellar motor switch protein FliM.
    
   0.570
Your Current Organism:
Zymomonas mobilis ZM4
NCBI taxonomy Id: 264203
Other names: Z. mobilis subsp. mobilis ZM4 = ATCC 31821, Zymomonas mobilis subsp. mobilis ATCC 31821, Zymomonas mobilis subsp. mobilis ATCC 31821 = ZM4, Zymomonas mobilis subsp. mobilis ZM4, Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.