STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZMO0301PFAM: PepSY-associated TM helix domain protein; KEGG: cja:CJA_2538 plasmolipin. (250 aa)    
Predicted Functional Partners:
ZMO1628
PFAM: PepSY-associated TM helix domain protein; KEGG: rce:RC1_3218 PepSY-associated TM helix, putative.
 
    0.585
ZMO1694
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: swi:Swit_4625 TonB-dependent receptor.
  
     0.534
ZMO1522
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: swi:Swit_3144 TonB-dependent receptor.
 
     0.531
ZMO0025
PFAM: protein of unknown function DUF6 transmembrane; KEGG: swi:Swit_0727 hypothetical protein.
  
     0.485
xseA
Exodeoxyribonuclease VII, large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family.
       0.479
ZMO1734
KEGG: cak:Caul_2416 hypothetical protein.
  
     0.478
ZMO0243
PFAM: conserved hypothetical protein; KEGG: swi:Swit_2231 hypothetical protein.
  
     0.431
ZMO0145
PFAM: peptidase M28; KEGG: gdj:Gdia_1817 peptidase M28.
  
    0.413
phoC
Acid phosphatase; KEGG: gox:GOX1624 nonspecific acid phosphatase precursor; PFAM: phosphoesterase PA-phosphatase related.
  
     0.400
Your Current Organism:
Zymomonas mobilis ZM4
NCBI taxonomy Id: 264203
Other names: Z. mobilis subsp. mobilis ZM4 = ATCC 31821, Zymomonas mobilis subsp. mobilis ATCC 31821, Zymomonas mobilis subsp. mobilis ATCC 31821 = ZM4, Zymomonas mobilis subsp. mobilis ZM4, Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.