STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZMO0318PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: spe:Spro_2063 short-chain dehydrogenase/reductase SDR. (251 aa)    
Predicted Functional Partners:
ZMO1946
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bam:Bamb_6431 short-chain dehydrogenase/reductase SDR.
 
     0.764
ZMO1561
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: swi:Swit_0579 short-chain dehydrogenase/reductase SDR.
  
 
   0.594
rpsF
Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
   
  
 0.586
ZMO1223
KEGG: swi:Swit_0086 [acyl-carrier-protein] S-malonyltransferase; TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase.
 
 
 0.524
ZMO1690
PFAM: heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; KEGG: swi:Swit_4767 heat shock protein DnaJ domain-containing protein.
   
 
 0.485
ZMO0405
TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit clpA; PFAM: AAA ATPase central domain protein; Clp domain protein; Torsin; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; ATP-dependent Clp protease ATP-binding subunit clpA; KEGG: swi:Swit_0126 ATP-dependent Clp protease, ATP-binding subunit ClpA; SMART: AAA ATPase; Belongs to the ClpA/ClpB family.
 
 
  
 0.459
ZMO0456
PFAM: ferredoxin; KEGG: xcv:XCV0319 putative vanillate O-demethylase oxidoreductase.
   
   0.459
rpsE
Ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family.
      
 0.459
ZMO0860
PFAM: ferredoxin; KEGG: acr:Acry_1765 ferredoxin.
   
   0.459
ZMO0035
PFAM: Ankyrin; KEGG: swi:Swit_2821 ankyrin.
   
 0.458
Your Current Organism:
Zymomonas mobilis ZM4
NCBI taxonomy Id: 264203
Other names: Z. mobilis subsp. mobilis ZM4 = ATCC 31821, Zymomonas mobilis subsp. mobilis ATCC 31821, Zymomonas mobilis subsp. mobilis ATCC 31821 = ZM4, Zymomonas mobilis subsp. mobilis ZM4, Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.