STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ZMO0342PFAM: aminotransferase class I and II; KEGG: swi:Swit_3551 aminotransferase. (400 aa)    
Predicted Functional Partners:
ZMO1678
KEGG: swi:Swit_4688 prephenate dehydratase; PFAM: prephenate dehydratase.
 
  0.991
ZMO1117
KEGG: swi:Swit_0657 glutamate synthase (NADPH) large subunit; PFAM: glutamine amidotransferase class-II; glutamate synthase alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase.
    
 0.953
ZMO0560
PFAM: aminotransferase class I and II; KEGG: sus:Acid_3339 aminotransferase.
   
 
 0.945
tyrC
Arogenate dehydrogenase; Can function as either prephenate dehydrogenase or as arogenate dehydrogenase in the biosynthesis of L-tyrosine. Catalyzes two analogous reactions: converts prephenate to 4-hydroxyphenylpyruvate and transforms L-arogenate to L-tyrosine. Is not able to utilize NADP(+) instead of NAD(+) as cosubstrate.
    
 0.936
ZMO0937
Aromatic-amino-acid transaminase; KEGG: swi:Swit_0763 aromatic amino acid aminotransferase; PFAM: aminotransferase class I and II.
   
 0.925
ZMO0327
KEGG: swi:Swit_3776 cystathionine beta-lyase; TIGRFAM: cystathionine beta-lyase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; Rhodanese domain protein.
   
 
 0.913
hisC
Histidinol-phosphate aminotransferase; Catalyzes the conversion of imidazole acetol phosphate to histidinol phosphate. Can also transaminate aromatic amino acids and histidine in addition to histidinol phosphate. Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
  
 
 
0.911
argG
KEGG: swi:Swit_2970 argininosuccinate synthase; PFAM: argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily.
   
 0.910
ZMO1116
Glutamate synthase, small subunit; KEGG: sal:Sala_2138 putative oxidoreductase; TIGRFAM: glutamate synthase, small subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
   
 
 0.903
ZMO1683
TIGRFAM: L-asparaginase, type II; KEGG: bps:BPSS2060 L-asparaginase; PFAM: Asparaginase/glutaminase; Belongs to the asparaginase 1 family.
     
 0.903
Your Current Organism:
Zymomonas mobilis ZM4
NCBI taxonomy Id: 264203
Other names: Z. mobilis subsp. mobilis ZM4 = ATCC 31821, Zymomonas mobilis subsp. mobilis ATCC 31821, Zymomonas mobilis subsp. mobilis ATCC 31821 = ZM4, Zymomonas mobilis subsp. mobilis ZM4, Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821
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