STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
zrpPFAM: regulatory protein AsnC/Lrp family; KEGG: atc:AGR_L_1547 hypothetical protein. (153 aa)    
Predicted Functional Partners:
ZMO0371
KEGG: atc:AGR_L_1549 aspartate racemase; TIGRFAM: aspartate racemase; PFAM: Asp/Glu/hydantoin racemase; Belongs to the aspartate/glutamate racemases family.
     
 0.853
ZMO1158
KEGG: ccv:CCV52592_1766 aspartate racemase; TIGRFAM: aspartate racemase; PFAM: Asp/Glu/hydantoin racemase; Belongs to the aspartate/glutamate racemases family.
      
 0.712
ZMO0859
PFAM: aminotransferase class V; KEGG: swi:Swit_0052 aminotransferase, class V.
      
 0.567
ZMO0373
Hypothetical protein.
      
 0.499
ZMO1117
KEGG: swi:Swit_0657 glutamate synthase (NADPH) large subunit; PFAM: glutamine amidotransferase class-II; glutamate synthase alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase.
     
 0.492
kup
Potassium transporter; Transport of potassium into the cell; Belongs to the HAK/KUP transporter (TC 2.A.72) family.
     
 0.469
ZMO1710
TIGRFAM: signal peptidase I; KEGG: swi:Swit_3871 signal peptidase I; PFAM: peptidase S24 and S26 domain protein; Belongs to the peptidase S26 family.
   
  
 0.461
ZMO1851
Flavodoxin; Low-potential electron donor to a number of redox enzymes. Belongs to the flavodoxin family.
   
  
 0.461
ZMO0161
PFAM: MotA/TolQ/ExbB proton channel; KEGG: sal:Sala_0331 MotA/TolQ/ExbB proton channel.
      
 0.459
sacB
Levansucrase; KEGG: gox:GOX0873 levansucrase; PFAM: glycoside hydrolase family 68.
      
 0.459
Your Current Organism:
Zymomonas mobilis ZM4
NCBI taxonomy Id: 264203
Other names: Z. mobilis subsp. mobilis ZM4 = ATCC 31821, Zymomonas mobilis subsp. mobilis ATCC 31821, Zymomonas mobilis subsp. mobilis ATCC 31821 = ZM4, Zymomonas mobilis subsp. mobilis ZM4, Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821
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