STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZMO0428KEGG: swi:Swit_2914 FeS assembly SUF system protein; TIGRFAM: FeS assembly SUF system protein; PFAM: protein of unknown function DUF59. (144 aa)    
Predicted Functional Partners:
ZMO0423
FeS assembly protein SufB; KEGG: swi:Swit_2918 cysteine desulfurase activator complex subunit SufB; TIGRFAM: FeS assembly protein SufB; PFAM: SufBD protein.
   
 0.990
ZMO0425
KEGG: swi:Swit_2917 FeS assembly ATPase SufC; TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter related.
  
 0.987
ZMO0427
Cysteine desulfurase, SufS subfamily; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
  
 0.984
ZMO0426
PFAM: SufBD protein; KEGG: swi:Swit_2916 SufBD protein.
   
 0.969
ZMO0429
KEGG: swi:Swit_2913 iron-sulfur cluster assembly accessory protein; TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; Belongs to the HesB/IscA family.
  
  
 0.854
ZMO0422
KEGG: swi:Swit_2919 BadM/Rrf2 family transcriptional regulator; TIGRFAM: transcriptional regulator, Rrf2 family; FeS assembly SUF system regulator; PFAM: protein of unknown function UPF0074.
       0.805
ZMO0591
KEGG: swi:Swit_0002 NifU-like involved in Fe-S cluster formation.
  
    0.637
ZMO1831
PFAM: NifQ family protein; KEGG: gdj:Gdia_1561 NifQ family protein.
  
    0.590
ZMO1341
PFAM: protein of unknown function zinc metallopeptidase putative; KEGG: nar:Saro_1749 protein of unknown function, zinc metallopeptidase putative.
      
 0.538
dapD
TIGRFAM: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; KEGG: nar:Saro_1835 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase; PFAM: transferase hexapeptide repeat containing protein; Belongs to the transferase hexapeptide repeat family.
       0.462
Your Current Organism:
Zymomonas mobilis ZM4
NCBI taxonomy Id: 264203
Other names: Z. mobilis subsp. mobilis ZM4 = ATCC 31821, Zymomonas mobilis subsp. mobilis ATCC 31821, Zymomonas mobilis subsp. mobilis ATCC 31821 = ZM4, Zymomonas mobilis subsp. mobilis ZM4, Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821
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