STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZMO0487PFAM: HpcH/HpaI aldolase; KEGG: pde:Pden_4110 HpcH/HpaI aldolase; Belongs to the HpcH/HpaI aldolase family. (270 aa)    
Predicted Functional Partners:
ZMO0486
KEGG: bcs:BCAN_B0167 hypothetical protein.
 
  
 0.947
ZMO0485
PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: azc:AZC_2509 acyl-CoA dehydrogenase.
 
  
 0.778
ZMO1307
Hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
     
 0.770
ZMO0030
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: oca:OCAR_4050 glyoxalase family protein.
  
  
 0.572
ZMO1955
KEGG: aci:ACIAD0166 malate dehydrogenase; PFAM: malic protein domain protein; malic protein NAD-binding.
  
  
 0.559
ppc
Phosphoenolpyruvate carboxylase; Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle; Belongs to the PEPCase type 1 family.
     
 0.519
ZMO0543
TIGRFAM: aconitate hydratase; KEGG: bth:BT_2072 aconitate hydratase; PFAM: aconitate hydratase domain protein.
 
   
 0.475
pdhB
Transketolase central region; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3) (By similarity).
  
  
 0.421
Your Current Organism:
Zymomonas mobilis ZM4
NCBI taxonomy Id: 264203
Other names: Z. mobilis subsp. mobilis ZM4 = ATCC 31821, Zymomonas mobilis subsp. mobilis ATCC 31821, Zymomonas mobilis subsp. mobilis ATCC 31821 = ZM4, Zymomonas mobilis subsp. mobilis ZM4, Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821
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