STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZMO0499TIGRFAM: penicillin-binding protein, 1A family; KEGG: swi:Swit_2817 1A family penicillin-binding protein; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase. (702 aa)    
Predicted Functional Partners:
ZMO0197
KEGG: swi:Swit_3846 1A family penicillin-binding protein; TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase.
 
 
0.950
ZMO0825
KEGG: swi:Swit_3953 peptidoglycan glycosyltransferase; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain.
  
 
 
 0.934
ZMO1089
KEGG: swi:Swit_0483 serine-type D-Ala-D-Ala carboxypeptidase; PFAM: beta-lactamase; peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; Belongs to the peptidase S11 family.
   
 
 0.912
ZMO0359
TIGRFAM: penicillin-binding protein 2; KEGG: swi:Swit_0495 peptidoglycan glycosyltransferase; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain.
  
 
 
 0.799
ZMO0830
KEGG: swi:Swit_3948 cell cycle protein; TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; Belongs to the SEDS family.
  
 
 
 0.758
ZMO0216
PFAM: Peptidase M23; KEGG: sal:Sala_2738 peptidase M23B.
  
     0.741
ZMO1403
PFAM: Peptidase M23; KEGG: swi:Swit_3913 peptidase M23B.
  
     0.732
mrdB
Rod shape-determining protein RodA; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily.
  
 
 
 0.702
ZMO0984
Peptidase M23; PFAM: Peptidoglycan-binding LysM; Peptidase M23; KEGG: swi:Swit_0639 peptidase M23B.
  
   
 0.700
ZMO0500
KEGG: swi:Swit_2874 hypothetical protein.
       0.678
Your Current Organism:
Zymomonas mobilis ZM4
NCBI taxonomy Id: 264203
Other names: Z. mobilis subsp. mobilis ZM4 = ATCC 31821, Zymomonas mobilis subsp. mobilis ATCC 31821, Zymomonas mobilis subsp. mobilis ATCC 31821 = ZM4, Zymomonas mobilis subsp. mobilis ZM4, Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821
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