STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZMO0507KEGG: swi:Swit_1371 GAF domain-containing protein; Belongs to the free Met sulfoxide reductase family. (161 aa)    
Predicted Functional Partners:
ZMO0937
Aromatic-amino-acid transaminase; KEGG: swi:Swit_0763 aromatic amino acid aminotransferase; PFAM: aminotransferase class I and II.
    
  0.904
metK
Methionine adenosyltransferase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme.
     
  0.900
metE
5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase; Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation; Belongs to the vitamin-B12 independent methionine synthase family.
     
  0.900
ZMO1745
TIGRFAM: methionine synthase; KEGG: swi:Swit_2399 methionine synthase (B12-dependent); PFAM: dihydropteroate synthase DHPS; Methionine synthase B12-binding module cap domain protein; Vitamin B12 dependent methionine synthase activation region; cobalamin B12-binding domain protein.
     
  0.900
ZMO1746
PFAM: homocysteine S-methyltransferase; KEGG: swi:Swit_2400 methionine synthase (B12-dependent).
     
  0.900
msrA
Peptide methionine sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
 
    
 0.793
ZMO0508
PFAM: GCN5-related N-acetyltransferase; KEGG: gdj:Gdia_1368 GCN5-related N-acetyltransferase.
       0.697
ZMO0506
PFAM: Class I peptide chain release factor; KEGG: xau:Xaut_0332 class I peptide chain release factor.
  
    0.673
ZMO1439
PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: vei:Veis_2839 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase.
 
      0.616
ZMO0509
KEGG: gdj:Gdia_2418 hypothetical protein.
       0.497
Your Current Organism:
Zymomonas mobilis ZM4
NCBI taxonomy Id: 264203
Other names: Z. mobilis subsp. mobilis ZM4 = ATCC 31821, Zymomonas mobilis subsp. mobilis ATCC 31821, Zymomonas mobilis subsp. mobilis ATCC 31821 = ZM4, Zymomonas mobilis subsp. mobilis ZM4, Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821
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