STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZMO0591KEGG: swi:Swit_0002 NifU-like involved in Fe-S cluster formation. (149 aa)    
Predicted Functional Partners:
ZMO0427
Cysteine desulfurase, SufS subfamily; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
  
 
 0.974
ZMO0859
PFAM: aminotransferase class V; KEGG: swi:Swit_0052 aminotransferase, class V.
  
 0.969
ZMO1022
KEGG: swi:Swit_0051 cysteine desulfurase; PFAM: aminotransferase class V.
  
 0.969
ZMO1834
Cysteine desulfurase NifS; Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine.
  
 0.969
ZMO0429
KEGG: swi:Swit_2913 iron-sulfur cluster assembly accessory protein; TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; Belongs to the HesB/IscA family.
  
  
 0.962
ZMO0860
PFAM: ferredoxin; KEGG: acr:Acry_1765 ferredoxin.
  
 0.948
dnaK
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 
 0.942
ZMO0425
KEGG: swi:Swit_2917 FeS assembly ATPase SufC; TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter related.
  
  
 0.809
ZMO0116
KEGG: sru:SRU_0748 rrf2 family protein (putative transcriptional regulator); TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074.
  
  
 0.778
ZMO0422
KEGG: swi:Swit_2919 BadM/Rrf2 family transcriptional regulator; TIGRFAM: transcriptional regulator, Rrf2 family; FeS assembly SUF system regulator; PFAM: protein of unknown function UPF0074.
  
  
 0.778
Your Current Organism:
Zymomonas mobilis ZM4
NCBI taxonomy Id: 264203
Other names: Z. mobilis subsp. mobilis ZM4 = ATCC 31821, Zymomonas mobilis subsp. mobilis ATCC 31821, Zymomonas mobilis subsp. mobilis ATCC 31821 = ZM4, Zymomonas mobilis subsp. mobilis ZM4, Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.